Frequently Asked Questions

How do I request a SeaWulf account?
How do I get a project on SeaWulf?
Can you give me an example of a Slurm job script?
How do I log into SeaWulf?
Understanding the Login Nodes
How do I enroll in DUO Security?
Enrolling Your Device into Duo from an Email from Duo Security
How do I reset my SeaWulf password?
How do I set up passwordless SSH?
What are the SeaWulf queues?
Which login nodes should I use?
Getting Started Guide
Guide to SeaWulf's AMD Milan nodes
How do I use the GPU nodes on Seawulf?
How do I use the Sapphire Rapids nodes?
What if my job doesn't need all the resources on a node?
How can I monitor resource usage on SeaWulf?
How can I check the status of a SLURM job?
How can I delete a SLURM job?
How can I submit a SLURM job?
How do I Format squeue?
How do I alter my PBS scripts for use with Slurm?
How do I handle output from my job?
How do I submit interactive jobs?
What are modules?
How do I use modules to manage what's available in my environment?
What modules should I load if I want to use the GCC compilers and libraries on SeaWulf?
What modules should I load if I want to use the Intel Parallel Studio compilers and libraries on SeaWulf?
What modules should I load if I want to use the Intel oneAPI compilers and libraries on SeaWulf?
What software is currently installed on SeaWulf?
How do I access SeaWulf with Open OnDemand?
How do I install Anaconda packages in my home or project directory?
How do I launch a Jupyter notebook on SeaWulf?
How do I run Docker Images and/or Singularity Container Images on SeaWulf?
How do I use X11 with interactive jobs?
How can I parallelize my MatLab jobs?
How do I parallelize my work? Part 1: Embarrassingly Parallel Tasks
How do I parallelize my work? Part 2: OpenMP and MPI
How can I access my project space on SeaWulf from my on-campus desktop?
How do I backup my SeaWulf files (using rclone)?
How do I request storage on SeaWulf?
How do I transfer files to and from SeaWulf?
How do I transfer files using Globus?
How do I use SSHFS to more easily access files on the cluster?
Are there HIPAA concerns associated with SeaWulf?
How do I make sure permissions are set properly in my project space?
What does "Connection reset by peer" or "Your account has been locked out" mean?
How do I get remote troubleshooting on SeaWulf?
What does "WARNING: LD_LIBRARY_PTH_modshare exists..." mean?
Why do I get a Segmentation fault using Intel MPI?
Why do Intel compilers take so long to start running?
Why is my job stuck in the queue?
How should I acknowledge the IACS in my publication?
SeaWulf – Stony Brook University High-Performance Computing Cluster
Using AFNI
Using Alphafold2 on SeaWulf
Using AmberMD
Using Bioinformatics Tools (Blast, BWA, etc.)
Including CBLAS in a project
Using Darshan on SeaWulf
Including FFTW3 in a Project
Using Freesurfer
Using FSL
How to use LAMMPS on Seawulf
Using Mathematica
How to use MatLab on Seawulf
Using MPFR on SeaWulf
How to use Python on Seawulf
Using QIIME on SeaWulf
Using R
How to use TensorFlow on Seawulf
How to use GPAW on Seawulf
Checking Filesystem Quotas on SeaWulf
Loading JAGS
How do I use Ollama to run LLMs locally on SeaWulf?
How can I access my RPX project space from my on-campus desktop?
How do I get access to the NVwulf GPU cluster?
Getting started on NVwulf