Loading HDF5

  • modulehdf5-parallel/gcc12.1/openmpi/1.12.2
  • modulehdf5-parallel/intel2023.1/1.12.2
  • modulehdf5-parallel/intel2022.2/1.12.2
  • modulehdf5-parallel/intel2024.0/1.14.3
  • modulehdf5-parallel/aocc4.0/openmpi/1.12.2
  • modulehdf5-parallel/gcc12.1/mvapich2/1.12.2
  • modulehdf5/1.6.10
  • modulehdf5/intel/1.6.10-parallel
  • modulehdf5/1.6.10-parallel
  • modulehdf5/intel/1.8.20-parallel
  • modulehdf5/1.8.4
  • modulehdf5/intel/1.10.5-parallel
  • modulehdf5/1.8.17
  • modulehdf5/parallel/intel2022.2/1.12.2
  • modulehdf5/1.8.19
Tip: load modules inside your SLURM job script, not just on the login node, so compute nodes see the same environment. Verify with which after loading.

Example usage

Load the HDF5 parallel module

module load hdf5-parallel/gcc12.1/openmpi/1.12.2

Compile a program against HDF5

mpicc -o my_hdf5_program my_hdf5_program.c -lhdf5

Availability

HDF5 is available on: SeaWulf, NVwulf, ClinWulf.