Introduction to NAMD on SeaWulf

NAMD is a parallel molecular dynamics code designed for high-performance simulation of large biomolecular systems. It is widely used in computational biology and biophysics to model the behavior of proteins, nucleic acids, and other molecules.

Available NAMD Versions

SeaWulf currently provides the following NAMD versions:

• namd/2.9
• namd/2.13

To load NAMD 2.13, use the following command: