Bowtie2
A fast and memory-efficient tool for aligning sequencing reads to long reference sequences.
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bamtools
A set of tools for working with BAM (Binary Alignment Map) files.
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bioconvert
A tool for converting bioinformatics data between various formats.
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diffexp
A tool for differential expression analysis in bioinformatics datasets.
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genome_assembly
Software tools for assembling genomes from short sequencing reads.
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genome_annotation
Tools for annotating genomes with genes, regulatory elements, and other features.
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GWAS
Tools for performing Genome-Wide Association Studies (GWAS) to identify genetic variants.
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hts
A set of tools for working with high-throughput sequencing (HTS) data.
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metagenomics
Tools for analyzing metagenomic data to study microbial communities.
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popgen
Tools for population genetics analysis, including allele frequency and genetic diversity.
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phylo
Software for constructing and analyzing phylogenetic trees.
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singlecell
Tools for analyzing single-cell RNA-seq data and other single-cell omics datasets.
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structural-variant
Tools for detecting and analyzing structural variations in genomes.
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